Pion-LT analysis instructions

If you have any questions or comments, please email - sjdkay@jlab.org, heinricn@jlab.org, jmurphy@jlab.org or junaid@jlab.org

• We would like the detector check replay to be done on first 50,000 events of every run, and compare plots with the standard ones in the binder. In addition, we want physics replay to be done on every run in its entirety. π+ plots such as missing mass, t, W , Q^2 and φ should be checked for anomalies. Replay instructions are below.
• Do not start the full analysis until after the run ends!
• Keep the file standard.kinematics up to date with the spectrometer settings for every configuration, so that the physics replay generates meaningful quantities. Use the beam energy determined from the arc measurement in the file, and the spectrometer angles from the TV.

• Shift leaders are asked to keep a running total of the number of e − π coincidence events falling within the missing mass and fiducial volume cuts set in the physics replay kumac, so that we can better estimate when to move to the next setting.

TLDR - Quick Start

• ssh cdaql1
• go_analysis
• Do a 50k replay for each arm as soon as you get 50k events
• ./run_coin_hms.sh
  • Execute the HMS 50k replay on the latest run
• ./run_coin_shms.sh
  • Execute the SHMS 50k replay on the latest run
• Execute the main analysis script after the run is over
• ./run_pionLT.sh
  • Execute the main analysis script
  • Follow the prompts, provide the required arguments

Detailed Online Analysis Instructions

• The analysis instructions below assume that you are logged in as cdaq on cdaql1 and are in the folder /home/cdaq/hallc-online/hallc_replay_lt
• If are not logged into cdaql1 as cdaq, then from any HCDESK machine, open a terminal and do the following -
  • ssh cdaql1
  • go_analysis
• This will setup the analysis environment and take you to /home/cdaq/hallc-online/hallc_replay_lt, do not type go_analysis as a means to return to that folder

Each new kinematic setting

• Every time you move to a new kinematic setting you must also adjust some things to get the analysis working
• You must edit the file standard.kinematics in the DBASE/COIN subdirectory to add the current kinematic information.
• Go to the last block in the file, leave a blank line and then copy and paste the block below itself, you must leave a blank line in between each kinematic setting
• An example of how this should look after you've pasted in the new block can be seen below -

• Edit the run number range of the two blocks, use 99999 if the run is ongoing
  • Remember to edit the run number range of the previous block too
• Next, enter the beam energy determined from the arc measurement, the target mass in amu (available at the top of the file), and the spectrometer angles from the TV.
  • The HMS angle (htheta) should be entered as negative and the SHMS angle (ptheta) should be entered as positive
• Next are the central momenta of the HMS and SHMS, followed by the mass of the particle each arm should detect (the leading letter indicates which arm: p = SHMS, h = HMS).
• Leave the helicity frequency as is
• The HMS and SHMS RF offsets are to centre the RF timing distributions
  • The SHMS offset should be chosen such that pions are centred at 2
• The eHadCoinTime_Offset should be chosen such that the coincidence time for pions is centred at 0
  • Don't worry about setting this precisely immediately, it can be corrected for in subsequent analysis trivially
• You can also add a comment line (start the comment line with a hash - #) before the run numbers to explain what the block is for
• An example of what this looks like when done correctly can be seen below -

After 50,000 events have been taken

• We run two scripts to check the detectors.
• Type ./run_coin_shms.sh to automatically replay the most recent run and launch the online replay GUI.
• Type ./run_coin_hms.sh to repeat the process for HMS detectors.
• For reference, all histos are saved in the HISTOGRAMS/Analysis/50k subdirectory. A copy of the scaler report is in REPORT_OUTPUT/Analysis/50k.
• Compare with the histograms in the golden run binder, make an elog entry if you notice any major differences
  • You should also make a log entry if you notice any consistent trends on the plots over your shift

After the run is over

• Once the run ends you need to execute an analysis script.
• The script is - run_pionLT.sh located in /home/cdaq/hallc-online/hallc_replay_lt (you should be in this folder already)
• This script requires three arguments -
  • Run number - This must be a positive integer, specify the run you want to analyse
  • Run type - You must enter one of - Prod - Lumi - HeePSing -HeePCoin - Optics , the argument is case sensitive
  • Target - You must enter one of - LH2 - LD2 - Dummy10cm - Carbon0p5 - Optics1 - Optics2 - CarbonHole , again, the argument is case sensitive
• The script will prompt you to re-enter the arguments if anything is not correct, hit ctrl+c at any time to exit the script
• Specify the run type and target as dictated by the run plan
• Depending upon the run type specified, the script will call the relevant analysis script, details on the individual scripts are provided in a separate section
  • run_pionLT.sh will print to screen the path of the script it is trying to execute
  • Generally, all of the scripts called will execute a replay, and then some subsequent analysis scripts
  • Once they complete, the script will fill the run list with relevant info, follow the onscreen prompts

PionLT Production Script

Plots

When a full replay is complete, a pdf output will produce the following plots:

Page 1 - Kinematic Distributions

Q2 vs W Plot

• Should see clear diamond cut in histogram
• Tag an expert if nothing is showing; limits will need to be adjusted

Epsilon Plots

• Epsilon peak should match run plan for current kinematic

t vs phi Plots

• Events should be concentrated to either side or about the middle (as shown above) of the polar plot
  • Phi value of events corresponds to SHMS angle setting for kinematic set with larger angles to the left and smaller angles to the right
    • note not all Q2 kinematic sets have lower angle setting

Missing Mass Plots

• Missing mass peak should be at neutron (proton) mass for LH2 (LD2) runs
• IMPORTANT: Integral of number of events in the peak should be displayed in red-outlined box
• If no peak is shown, then the standard.kinematics file is not set or set incorrectly for the run

Page 2 - Electron-Pion Acceptance Distributions

HMS Standard Cut Plots

• Tag expert if abnormal patterns seen in plots

SHMS Standard Cut Plots

• Tag expert if abnormal patterns seen in plots

Page 3 - Electron-Pion Calorimeter Distributions

HMS Cal Plots

SHMS Cal Plots

Page 4 - Electron-Pion RF Distributions

SHMS RF Plots

• If RF peak not shown (should be at 2), either update RF offset or tag an expert

SHMS RF vs Missing Mass Plots

• Pion events correspond to the large RF peak
  • Kaon events in clump at lower RF in first figure above, and should be cut out in second figure
• Neutron/proton events in strong band at MM=0.9
  • Make sure these events are not removed from cuts

Page 5/6 - Electron-Pion Aero/HGC/NGC PID Distributions

Cerenkov Detectors with Different Particles

Particle	NGC	HGC	Aero
e	YES	YES	YES
pi	NO	YES	YES
k	NO	NO	YES
p	NO	NO	NO

SHMS HGC/aero Cerenkov Plots

SHMS HGC vs Aero Cerenkov Plots

Page 7/8 - Electron-Pion Coin Time/Missing Mass Distributions

Electron-Pion Coin-Time Plots

• Large peak should be at 0
  • If not, coin-time offset should be adjusted in database file for run, or in python script
• Ensure prompt (pink) peak aligns with large peak
• ensure random cuts (green) align with 3 small peaks on either side of prompt peak

Missing Mass Plots

• Large missing mass peak should be at nucleon mass
• Ensure after cuts noise is reduced and prompt peak is aligned correctly with the large peak at nucleon mass

Coin Time Beta Plots

• Beta should be at 1
• Ensure random cuts (green) are covering 3 coin-time peaks at either side of the prompt peak (red) at Coin time of 0

Coin Time vs Missing Mass Plots

• Again ensure random cuts (green) are covering 3 coin-time peaks at either side of the prompt peak (red) at Coin time of 0
• After cut should see missing mass peak at nucleon mass
  • Ensure this strip is not cut-off

Debugging

• For information on how to adjust the cuts, see here
  • Physics plots looking odd are likely due to timing cuts not being set correctly
• If there are warnings or prompts that files aren't being found, read them and check if they're true
  • For example if it complains /This/Is/My/Path/To/File.txt doesn't exist, just do - ll /This/Is/My/Path/To/File.txt

Debugging - General

If any of the plots look odd/not as described, you should -

• Double check that standard.kinematics has been updated and is CORRECT, verify that when you start the replay the values you THINK it is reading appear in the hcana initiation info dump. See the images below -

• Watch out for silly typos, e.g. gbeam rather than gpbeam.
• Note that standard.kinematics affects things you think it really shouldn't! If things look wrong this is absolutely the first thing you should check.
• Make sure you have the correct particles going into each spectrometer

You should not -

• Panic
• Start editing scripts and deleting things without knowing what you are adjusting
• Delete ANYTHING in the scripts without also leaving a comment explaining what you have deleted or changed